SNP Profiles of ICS 43 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	CT	AA	CT
1._ICS_43	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	CT	AA	CT
2._RUQ_144	_	AG	GG	CT	_	_	_	GT	_	_	_	CT	AA	_
3._RUQ_144	_	_	GG	_	_	_	_	GT	_	CT	_	_	AA	_
4._ICS43	_	_	CC	_	_	_	_	_	_	_	_	CT	_	CT
5._ICS_43	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
6._GC-01-051-3-06	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
7._GC-01-051-3-06	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
8._GC-01-051-3-06	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
9._GC-01-051-3-06	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
10._GC-01-051-3-06	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
11._GC-01-051-3-06	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
12._GC-01-051-3-06	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
13._GC-01-051-3-06	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
14._GC-01-051-3-06	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
15._ICS_43	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
16._ICS_43	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
17._ICS_43	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
18._ICS_43	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
19._ICS_43	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
20._ICS_43	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
21._ICS_43	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
22._ICS_43	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
23._GC-01-051-3-06	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
24._ICS_43	CC	GG	CC	CC	TT	_	TT	TT	CC	CC	AA	CC	GG	CC
25._RUQ_144	AG	AG	CC	AG	AA	AA	GG	AA	_	_	AA	AG	AA	AG
26._ICS_43_Fld#_164_Plt#_1	AG	AG	CC	AG	AA	AA	GG	AA	_	_	AA	AG	AA	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	TT	CC	GG	GT	AG	TT	AA	CC	TT	TT	CC	AG
1._ICS_43	AA	GG	TT	CC	GG	GT	AG	TT	AA	CC	TT	TT	CC	AG
2._RUQ_144	_	_	_	CC	GG	GT	_	TT	AA	CC	TT	TT	CC	AG
3._RUQ_144	_	_	_	_	GG	GT	AG	_	AA	CC	_	_	CC	_
4._ICS43	_	_	_	CC	CC	_	_	_	AA	CC	_	_	_	_
5._ICS_43	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
6._GC-01-051-3-06	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
7._GC-01-051-3-06	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
8._GC-01-051-3-06	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
9._GC-01-051-3-06	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
10._GC-01-051-3-06	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
11._GC-01-051-3-06	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
12._GC-01-051-3-06	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
13._GC-01-051-3-06	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
14._GC-01-051-3-06	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
15._ICS_43	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
16._ICS_43	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
17._ICS_43	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
18._ICS_43	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
19._ICS_43	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
20._ICS_43	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
21._ICS_43	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
22._ICS_43	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	GG
23._GC-01-051-3-06	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	_
24._ICS_43	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA	_
25._RUQ_144	AA	GG	AA	GG	CC	AC	_	AA	AA	CC	AA	_	CC	_
26._ICS_43_Fld#_164_Plt#_1	AA	GG	AA	GG	CC	AC	_	AA	AA	CC	AA	_	CC	_

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	AA	CT	GG	CG	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
1._ICS_43	AG	AA	CT	GG	_	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
2._RUQ_144	_	AA	CT	GG	CG	AC	CT	GT	AC	_	_	X_X	X_X	X_X
3._RUQ_144	_	_	_	GG	_	_	_	_	AC	_	_	X_X	X_X	X_X
4._ICS43	_	AA	_	GG	CG	AC	CT	_	AC	_	_	X_X	X_X	X_X
5._ICS_43	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
6._GC-01-051-3-06	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
7._GC-01-051-3-06	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
8._GC-01-051-3-06	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
9._GC-01-051-3-06	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
10._GC-01-051-3-06	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
11._GC-01-051-3-06	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
12._GC-01-051-3-06	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
13._GC-01-051-3-06	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
14._GC-01-051-3-06	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
15._ICS_43	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
16._ICS_43	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
17._ICS_43	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
18._ICS_43	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
19._ICS_43	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
20._ICS_43	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
21._ICS_43	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
22._ICS_43	GG	AA	CC	GG	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
23._GC-01-051-3-06	GG	AA	CC	_	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
24._ICS_43	GG	AA	CC	_	CC	AA	TT	TT	AA	AA	GG	X_X	X_X	X_X
25._RUQ_144	GG	AA	AG	GG	CG	AC	AG	AC	AC	TT	GG	X_X	X_X	X_X
26._ICS_43_Fld#_164_Plt#_1	GG	AA	AG	GG	CG	AC	AG	AC	AC	TT	GG	X_X	X_X	X_X

Input profile: ICS_43 RUQ_144

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._ICS_43

identical
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

2._ICS_43 RUQ_144

identical
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._ICS_43 RUQ_144

identical
12 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

4._ICS_43 ICS43

84.6 %
13 shared markers

View View all Clone Any

Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

5._ICS_43

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1306 2

Dapeng Zhang, 2016

6._ICS_43 GC-01-051-3-06

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

7._ICS_43 GC-01-051-3-06

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

8._ICS_43 GC-01-051-3-06

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

9._ICS_43 GC-01-051-3-06

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

10._ICS_43 GC-01-051-3-06

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

11._ICS_43 GC-01-051-3-06

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

12._ICS_43 GC-01-051-3-06

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

13._ICS_43 GC-01-051-3-06

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

14._ICS_43 GC-01-051-3-06

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

15._ICS_43

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1306 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._ICS_43

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1306 2

Dapeng Zhang, 2016

17._ICS_43

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1306 4

Dapeng Zhang, 2016

18._ICS_43

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1306 12

Dapeng Zhang, 2016

19._ICS_43

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1306 14

Dapeng Zhang, 2016

20._ICS_43

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1306 15

Dapeng Zhang, 2016

21._ICS_43

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1306 8 > FP

Dapeng Zhang, 2016

22._ICS_43

50 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1306 9 > FP

Dapeng Zhang, 2016

23._ICS_43 GC-01-051-3-06

48.6 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

24._ICS_43

48.6 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1306 3

Dapeng Zhang, 2016

25._ICS_43 RUQ_144

48.5 %
34 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

26._ICS_43 ICS_43_Fld#_164_Plt#_1

48.5 %
34 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 164, Tree: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25